Skip to main content

Table 2 Cox regression analysis: Hazard Ratio (HR) for the development of arsenic induced skin lesions by presence or absence of genomic deletions in different chromosomal locations in male subjects

From: Association between genome-wide copy number variation and arsenic-induced skin lesions: a prospective study

CNV genomic coordinates (GRCh37/hg19)

Cytoband

Length (bps)

Nearest Gene

Distance to Nearest Gene (bps)

HR (gene) Male subjecta

95% CI (gene)

p-value (gene)

Bonferroni p-value (gene) Male subjects

interaction p-value

Nearest reported CNV in DGV database

Distance to Nearest reported CNV

chr9:40,768,295-40,779,600

9p13.1

11,306

ZNF658 (−)

0

2.42

1.62

3.62

1.76E-05

0.020

0.048

chr9:40,773,931..40940341

0

chr9:40,779,600-40,794,798

9p13.1

15,199

ZNF658 (−)

0

2.41

1.60

3.63

2.77E-05

0.031

0.054

chr9:40,781,674..40784428

0

chr9:40,794,798-40,812,799

9p13.1

18,002

ZNF658 (−)

0

2.55

1.71

3.79

4.01E-06

0.005

0.035

chr9:40,773,931..40940341

0

chr9:40,824,400-40,839,148

9p13.1

14,749

ZNF658 (−)

0

2.16

1.50

3.12

3.95E-05

0.045

0.180

chr9:40,832,700..41365793

0

chr15:29,214,310-29,222,222

15q13.1

7913

APBA2 (+)

0

2.59

1.64

4.09

4.53E-05

0.051

0.006

chr15:29,212,947..29288420

0

chr15:29,222,222-29,231,330

15q13.1

9109

APBA2 (+)

0

3.08

1.83

5.19

2.29E-05

0.026

0.001

chr15:29,212,947..29288420

0

  1. aHazard Ratio if genomic deletion is present; Cox regression model includes: genomic segment, age, gender, UACR and interaction term “genomic segment x gender”
  2. Top genomic segments are sorted by chromosome