Position | Alleles | Mexico (n = 390) | Bangladesh (n = 497) | Meta-analysis | Directiona | |||||
---|---|---|---|---|---|---|---|---|---|---|
SNP | Chr | (bp) | Minor/Ref | p | MAF | p | MAF | p | Mapped genes | |
Mental composite scores | ||||||||||
rs9642758 | 8 | 35,721,159 | A/G | 0.0004 | 0.076 | 0.0023 | 0.123 | 4.35E-06 | ++ | UNC5D |
rs2276102 | 11 | 87,013,438 | T/C | 0.0028 | 0.411 | 0.0011 | 0.330 | 1.13E-05 | ++ | TMEM135 |
rs7952312 | 11 | 99,789,888 | T/G | 0.0031 | 0.365 | 0.0019 | 0.440 | 2.05E-05 | -- | CNTN5 |
rs7556550 | 1 | 89,928,044 | T/C | 0.0038 | 0.382 | 0.0033 | 0.190 | 4.26E-05 | -- | GBP5/GBP6/LRRC8B/LRRC8C |
rs619092 | 3 | 173,131,044 | T/C | 0.0018 | 0.248 | 0.0067 | 0.225 | 4.69E-05 | -- | NLGN1 |
rs10503970 | 8 | 34,866,368 | A/G | 0.0018 | 0.077 | 0.0073 | 0.116 | 4.98E-05 | ++ | UNC5D |
rs2020402 | 11 | 87,120,819 | T/G | 0.0017 | 0.343 | 0.0090 | 0.403 | 5.98E-05 | -- | LOC101929137/ TMEM135 |
rs2483678 | 1 | 10,582,047 | T/C | 0.0045 | 0.135 | 0.0043 | 0.308 | 6.31E-05 | -- | PEX14 |
rs2480786 | 1 | 10,567,658 | A/G | 0.0057 | 0.134 | 0.0037 | 0.299 | 6.94E-05 | ++ | PEX14 |
rs10270302 | 7 | 150,213,019 | T/C | 0.0021 | 0.071 | 0.0095 | 0.079 | 7.53E-05 | ++ | GIMAP7 |
rs17035156 | 1 | 10,585,527 | A/C | 0.0050 | 0.133 | 0.0048 | 0.302 | 7.84E-05 | -- | PEX14 |
rs4811754 | 20 | 55,392,174 | A/C | 0.0031 | 0.423 | 0.0079 | 0.245 | 8.68E-05 | -- | TFAP2C |
rs1498706 | 12 | 93,996,980 | A/G | 0.0041 | 0.275 | 0.0066 | 0.161 | 9.04E-05 | -- | MRPL42/SOCS2/CRADD |
rs10493836 | 1 | 90,574,778 | T/C | 0.0053 | 0.083 | 0.0067 | 0.068 | 0.00012 | -- | ZNF326/LRRC8D |
rs10953862 | 7 | 79,063,644 | A/G | 0.0067 | 0.240 | 0.0060 | 0.292 | 0.00013 | -- | MAGI2 |
rs1335647 | 1 | 89,832,464 | T/C | 0.0093 | 0.438 | 0.0048 | 0.221 | 0.00014 | ++ | GBP6 |
rs12120749 | 1 | 52,145,202 | A/G | 0.0098 | 0.253 | 0.0049 | 0.041 | 0.00015 | -- | OSBPL9 |
rs4734384 | 8 | 99,133,678 | A/C | 0.0075 | 0.260 | 0.0079 | 0.313 | 0.00019 | -- | POP1 |
rs1349784 | 11 | 99,806,211 | T/G | 0.0067 | 0.383 | 0.0098 | 0.409 | 0.00021 | -- | CNTN5 |
rs999995 | 10 | 78,735,498 | A/G | 0.0085 | 0.485 | 0.0098 | 0.419 | 0.00026 | ++ | KCNMA1 |
Motor composite scores | ||||||||||
rs3817591 | 15 | 33,057,775 | T/C | 5.54E-05 | 0.427 | 0.0031 | 0.490 | 1.16E-06 | -- | FMN1 |
rs4308495 | 5 | 30,155,798 | T/C | 0.0016 | 0.089 | 0.0019 | 0.121 | 1.15E-05 | ++ | |
rs28694796 | 7 | 155,403,168 | A/G | 0.0006 | 0.081 | 0.0093 | 0.068 | 2.72E-05 | -- | EN2/RBM33/CNPY1/SHH |
rs322172 | 17 | 25,659,288 | A/G | 0.0088 | 0.232 | 0.0010 | 0.263 | 2.97E-05 | ++ | MIR4522/WSB1/KSR1 |
rs10015043 | 4 | 169,485,237 | A/G | 0.0040 | 0.422 | 0.0025 | 0.366 | 3.28E-05 | ++ | PALLD |
rs13353041 | 1 | 55,773,756 | A/G | 0.0080 | 0.051 | 0.0015 | 0.074 | 3.96E-05 | ++ | USP24/MIR442 |
rs170602 | 20 | 56,019,162 | T/C | 0.0082 | 0.186 | 0.0016 | 0.210 | 4.19E-05 | ++ | SPO11/RAE1/RBM38/CTCFL/PCK1/ZBP1 |
rs9945240 | 18 | 44,139,893 | A/G | 0.0067 | 0.062 | 0.0021 | 0.054 | 4.53E-05 | ++ | LOXHD1 |
rs10022111 | 4 | 169,484,303 | A/G | 0.0018 | 0.459 | 0.0072 | 0.297 | 4.91E-05 | -- | PALLD |
rs2318817 | 18 | 65,494,366 | A/C | 0.0025 | 0.048 | 0.0064 | 0.119 | 5.57E-05 | ++ | LOC643542 |
rs2552531 | 2 | 218,698,323 | A/G | 0.0050 | 0.019 | 0.0038 | 0.066 | 6.19E-05 | ++ | TNS1 |
rs17075573 | 3 | 40,131,246 | T/C | 0.0027 | 0.116 | 0.0086 | 0.082 | 8.38E-05 | -- | MYRIP |
rs30732 | 5 | 66,151,551 | T/C | 0.0058 | 0.302 | 0.0052 | 0.123 | 9.42E-05 | ++ | MAST4 |
rs6458566 | 6 | 47,361,788 | A/G | 0.0053 | 0.310 | 0.0056 | 0.467 | 9.50E-05 | ++ | TNFRSF21/CD2AP |
rs1647292 | 8 | 4,017,692 | T/C | 0.0031 | 0.158 | 0.0091 | 0.177 | 9.83E-05 | -- | CSMD1 |
rs1324800 | 13 | 48,388,487 | A/G | 0.0033 | 0.041 | 0.0089 | 0.078 | 0.00010 | ++ | SUCLA2 |
rs16849242 | 3 | 162,188,734 | T/C | 0.0097 | 0.171 | 0.0049 | 0.333 | 0.00014 | ++ | |
rs17111847 | 1 | 55,749,478 | T/C | 0.0070 | 0.052 | 0.0070 | 0.067 | 0.00015 | -- | USP24/MIR442 |
rs11600036 | 11 | 81,001,092 | A/G | 0.0062 | 0.135 | 0.0080 | 0.433 | 0.00016 | ++ | |
rs10122848 | 9 | 25,368,388 | T/G | 0.0071 | 0.073 | 0.0077 | 0.229 | 0.00017 | -- | |
rs12593647 | 15 | 87,117,255 | A/C | 0.0090 | 0.164 | 0.0090 | 0.262 | 0.00024 | ++ | AGBL1 |